DANIEL C. RICHTER
Research Assistant
Dept. Algorithms in Bioinformatics, WSI, University of Tuebingen
E-Mail: richtermail at googlemail.com

DISSERTATION

Thesis

KEY PUBLICATIONS

OSLay: Optimal Syntenic Layout of Unfinished Assemblies
D.C. Richter. S.C. Schuster, D.H. Huson,
Bioinformatics, 2007. 23(13):1573-1579
paper - software

Methods for Comparative Metagenomics
D.H. Huson, D.C. Richter, S. Mitra and A.F. Auch and S.C. Schuster,
Asian Pacific Bioinformatics Conference (APBC '09), 2009
Also appeared in: BMC Bioinformatics 2009, 10(Suppl 1):S12
paper - software

MetaSim—A Sequencing Simulator for Genomics and Metagenomics
D.C. Richter, F. Ott, A.F. Auch, R. Schmid, D.H. Huson,
PLoS ONE 3(10): e3373, 2008
paper - software

COMPLETE LIST OF PUBLICATIONS

2009

• F. Zhao, J. Qi, D.C. Richter, A. Buboltz, D.H. Huson and S.C. Schuster:
  Metagenomic analysis of the microbiome associated with the hairs of extinct woolly mammoths, 2009. submitted to PNAS.
  
• D.H. Huson, D.C. Richter, T. Rattei:
  MEGAN-DB: The MEtaGenome ANalyzer Database,
  in preparation, 2009
  Database
• S. Mitra, D.C. Richter, D.H. Huson:
  Metagenome Analysis using MEGAN,
  in preparation, 2009
• D.H. Huson, D.C. Richter, S. Mitra and A.F. Auch and S.C. Schuster: Methods for Comparative Metagenomics,
  Asian Pacific Bioinformatics Conference (APBC '09), 2009
  Also appeared in: BMC Bioinformatics 2009, 10(Suppl 1):S12
  paper, software

2008

• D.C. Richter, F. Ott, A.F. Auch, R. Schmid, D.H. Huson:
  MetaSim—A Sequencing Simulator for Genomics and Metagenomics,
  PLoS ONE 3(10): e3373, 2008
  paper - software

2007

• D.H. Huson, T. Dezulian, M. Franz, C. Rausch, D.C Richter and R. Rupp:
  Dendroscope: An interactive viewer for large phylogenetic trees,
  BMC Bioinformatics. 2007 Nov 22;8(1):460
  paper - software
• D.C. Richter, D.H. Huson, S.C. Schuster:
  OSLay: Optimal Syntenic Layout of Unfinished Assemblies, Bioinformatics, 2007. 23(13):1573-1579
  paper - software

CONFERENCE ATTENDANCE

• Selected for an oral presentation at the SIG M3 meeting (ISMB 2009), April 2009.
  Functional Classification of Environmental Reads using Gene Ontology
  slides
• Software Demo (with D.H. Huson) given at the Metagenomics 2008 Conference in San Diego, USA, November 2008.
  Megan and MetaSim
• Poster presented at the Metagenomics 2008 Conference in San Diego, USA, November 2008.
  MetaSim—A Sequencing Simulator for Genomics and Metagenomics
• Poster presented at the DECHEMA Status Seminar on Microbial Genome Research in Frankfurt am Main, Germany, June 2008.
  MetaSim—A Sequencing Simulator for Genomics and Metagenomics
• 2nd CeBiTec symposium „The Future of Genome Research in the Light of Ultrafast Sequencing Technologies“ in Bielefeld, Germany, June 2007.
• German Conference on Bioinformatics (GCB) in Tuebingen, Germany, September 2006
• Poster presented at the Third Annual RECOMB Satellite Workshop on Comparative Genomics in Dublin, Ireland, September 2005.
  OSLay: optimal syntenic layout of unfinished assemblies

TEACHING

• Practical Course/Seminar "Software Engineering", SS 2009
• Seminar Genomics, WS 2008/2009
• Practical Course/Seminar "Software Engineering", SS 2008
• Practical Course "Bioinformatics Software Tools", WS 2007/2008
• Seminar "Genomics and Metagenomics", WS 2007/2008
• Practical Course/Seminar "Software Engineering", SS 2007
• Practical Course "Bioinformatics Software Tools", WS 2006/2007
• Proseminar "Grundlagen der Bioinformatik", SS 2006
• Seminar "Gene Genealogies, Variation and Evolution", WS 2005/2006
• Exercises for the lecture Algorithms in Bioinformatics II, SS 2005